MultiQC Report

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

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Report generated on 2025-03-31, 03:05 UTC based on data in: /tank/lmapunda/ARI/fastp_trim

General Statistics

Showing ³⁹⁴/₃₉₄ rows and ⁵/₇ columns.

Sample Name	% Duplication	% > Q30	Mb Q30 bases	Reads After Filtering	GC content	% PF	% Adapter
ARH3511	0.4%	97.0%	3.9Mb	0.0M	46.0%	90.9%	34.9%
ARH3530	3.2%	97.7%	51.9Mb	0.9M	42.9%	93.2%	9.3%
ARH3562	2.0%	98.1%	0.6Mb	0.0M	45.4%	89.1%	6.6%
ARH3574	6.3%	98.3%	10.3Mb	0.2M	43.8%	84.7%	14.0%
ARH3577	16.2%	98.5%	265.2Mb	4.5M	54.9%	94.0%	6.0%
ARH3607	5.6%	98.0%	14.4Mb	0.2M	45.5%	89.3%	8.1%
ARH3676	0.8%	97.8%	130.8Mb	2.2M	41.7%	92.0%	9.0%
ARH3677	11.9%	98.1%	41.9Mb	0.7M	47.9%	85.7%	14.6%
ARH3688	29.3%	97.9%	67.3Mb	1.1M	50.0%	92.7%	8.9%
ARH3698	12.6%	97.2%	69.5Mb	1.2M	47.2%	93.0%	4.8%
ARH3731	32.1%	98.4%	56.8Mb	1.0M	49.1%	91.9%	9.8%
ARH3812	20.7%	97.7%	88.3Mb	0.7M	43.6%	92.3%	35.7%
ARH3819	46.9%	99.2%	81.6Mb	1.4M	45.1%	94.7%	7.7%
ARH3836	34.8%	94.6%	97.2Mb	0.9M	55.4%	78.1%	57.3%
ARH3842	52.8%	98.3%	114.2Mb	1.9M	52.1%	93.1%	9.3%
ARH3849	15.0%	96.2%	12.2Mb	0.2M	45.8%	82.3%	10.2%
ARH3885	16.6%	98.5%	0.2Mb	0.0M	54.3%	90.9%	13.5%
ARH3886	32.8%	97.9%	164.9Mb	2.8M	50.1%	91.8%	10.8%
ARH3954	25.9%	98.2%	147.6Mb	2.5M	46.1%	95.0%	7.2%
ARH4006	6.1%	98.3%	22.3Mb	0.4M	47.1%	96.4%	4.0%
ARH4077	13.8%	98.1%	167.0Mb	2.8M	54.2%	92.4%	9.1%
ARH4081	4.4%	97.7%	81.2Mb	1.4M	52.8%	94.1%	4.1%
ARH4088	29.4%	97.7%	40.1Mb	0.7M	50.7%	92.1%	10.2%
ARH4096	9.4%	97.9%	78.0Mb	1.3M	47.7%	95.9%	6.3%
ARH4097	8.7%	98.0%	29.3Mb	0.5M	45.9%	91.0%	8.4%
ARH4128	43.5%	98.0%	423.2Mb	3.5M	38.2%	96.4%	49.5%
ARH4175	2.9%	96.7%	12.1Mb	0.2M	47.4%	91.2%	5.0%
ARH4181	70.4%	98.4%	11.3Mb	0.2M	55.1%	94.3%	9.6%
ARH4188	66.3%	98.3%	15.0Mb	0.3M	54.4%	93.7%	10.0%
ARH4197	66.1%	98.5%	212.6Mb	3.6M	53.0%	83.3%	16.4%
ARH4220	22.0%	98.1%	129.9Mb	2.2M	48.8%	93.0%	7.7%
ARH4225	2.4%	97.0%	167.2Mb	2.9M	42.5%	88.6%	10.3%
ARH4269	13.4%	97.0%	176.6Mb	3.0M	46.5%	88.8%	10.2%
ARH4283	2.8%	97.0%	84.2Mb	1.4M	47.9%	93.7%	5.5%
ARH4293	27.7%	97.2%	20.9Mb	0.4M	46.8%	90.5%	11.2%
ARH4305	2.9%	97.1%	30.0Mb	0.5M	45.6%	94.4%	4.4%
ARH4349	25.2%	97.6%	265.3Mb	4.5M	44.7%	94.7%	6.3%
ARH4372	9.5%	97.3%	104.9Mb	1.8M	45.7%	93.1%	3.9%
ARH4400	30.8%	97.8%	108.5Mb	1.8M	45.8%	93.5%	7.5%
ARH4430	43.5%	97.7%	155.5Mb	2.6M	49.1%	91.6%	6.6%
ARH4435	32.8%	97.9%	320.4Mb	5.4M	46.8%	95.9%	3.8%
ARH4475	8.0%	97.8%	34.8Mb	0.6M	51.2%	94.1%	7.5%
ARH9840	32.8%	99.0%	19.6Mb	0.3M	48.3%	96.2%	6.2%
BGK001	9.9%	94.4%	100.7Mb	0.9M	61.4%	86.6%	39.7%
DRH3634	6.5%	97.2%	23.3Mb	0.2M	48.8%	93.9%	40.1%
DRH3650	1.8%	96.2%	60.0Mb	0.5M	47.7%	89.3%	36.6%
DRH3684	39.5%	98.7%	27.8Mb	0.5M	46.9%	88.4%	12.0%
DRH3692	51.9%	98.6%	268.5Mb	4.5M	46.2%	94.1%	6.6%
DRH3696	26.3%	97.9%	39.4Mb	0.7M	38.9%	89.3%	11.2%
DRH3703	13.7%	98.3%	27.4Mb	0.5M	44.5%	78.3%	20.6%
DRH3706	2.4%	98.1%	20.1Mb	0.3M	46.2%	92.4%	5.5%
DRH3724	16.0%	98.1%	163.3Mb	2.8M	45.9%	89.4%	12.2%
DRH3735	3.3%	98.0%	44.2Mb	0.7M	42.9%	86.9%	13.8%
DRH3739	23.8%	98.6%	56.6Mb	1.0M	45.1%	84.0%	14.8%
DRH3742	29.7%	98.4%	304.2Mb	5.1M	46.6%	82.0%	16.8%
DRH3763	42.4%	99.2%	150.5Mb	2.5M	40.9%	97.2%	2.3%
DRH3776	14.2%	99.2%	147.7Mb	2.5M	45.9%	96.6%	5.0%
DRH3825	16.3%	97.9%	28.5Mb	0.5M	46.7%	90.8%	15.6%
DRH3828	27.5%	97.6%	27.9Mb	0.5M	47.4%	93.0%	7.4%
DRH3831	40.2%	98.3%	255.1Mb	4.3M	48.6%	94.9%	5.8%
DRH3857	6.6%	95.6%	106.9Mb	1.9M	49.3%	81.6%	6.4%
DRH3868	9.9%	97.8%	51.0Mb	0.9M	45.2%	93.6%	4.9%
DRH3882	9.0%	97.5%	113.6Mb	1.9M	47.0%	95.6%	4.0%
DRH3884	3.5%	96.4%	95.1Mb	1.6M	46.0%	92.3%	7.5%
DRH3886	6.2%	97.1%	108.0Mb	1.8M	47.3%	93.4%	6.8%
DRH3889	0.4%	97.7%	23.0Mb	0.4M	45.4%	94.1%	4.4%
DRN3803	16.6%	98.3%	229.5Mb	3.9M	44.1%	93.4%	7.4%
DRN3815	0.0%	98.5%	0.0Mb	0.0M	46.2%	97.7%	0.0%
HLH4030	9.6%	96.5%	85.2Mb	0.8M	46.3%	90.0%	50.2%
HLH4044	34.8%	98.1%	290.1Mb	2.4M	47.4%	94.7%	41.7%
HLH4072	24.2%	98.2%	100.1Mb	1.7M	48.2%	94.8%	7.4%
HLH4099	5.8%	98.0%	17.9Mb	0.3M	42.4%	96.0%	4.4%
HLH4100	1.3%	95.4%	26.2Mb	0.5M	47.3%	86.2%	7.3%
HZH4088	16.2%	96.9%	183.5Mb	3.1M	60.2%	94.7%	6.6%
HZH4091	40.9%	98.5%	316.9Mb	5.3M	47.5%	92.1%	12.3%
IST1170	57.7%	99.2%	35.4Mb	0.6M	45.3%	97.3%	3.9%
IST1172	4.6%	97.6%	84.8Mb	1.4M	48.1%	91.5%	4.4%
IST1174	14.1%	98.2%	292.5Mb	4.9M	47.7%	93.6%	6.4%
IST1186	2.3%	97.7%	43.4Mb	0.7M	50.9%	94.4%	3.0%
KDH6972	5.3%	97.2%	18.5Mb	0.2M	43.7%	85.7%	56.6%
KDH7006	55.2%	98.7%	224.1Mb	3.8M	47.8%	94.1%	6.8%
KDH7007	1.4%	98.5%	3.7Mb	0.1M	45.2%	89.2%	10.3%
KDH7034	39.5%	98.3%	13.6Mb	0.2M	46.4%	84.9%	15.5%
KDH7035	2.0%	97.6%	47.4Mb	0.8M	44.4%	90.1%	12.5%
KDH7061	41.6%	97.6%	449.2Mb	3.7M	38.7%	97.3%	46.3%
KDH7071	39.1%	97.8%	313.5Mb	2.6M	39.7%	96.3%	48.2%
KDH7076	28.9%	99.1%	103.3Mb	1.7M	41.5%	96.4%	5.7%
KDH7084	34.3%	98.3%	185.7Mb	3.1M	44.3%	96.2%	4.2%
KDH7093	19.5%	99.3%	183.6Mb	3.1M	45.5%	95.8%	6.8%
KDH8003	8.4%	97.6%	149.0Mb	2.5M	43.1%	90.3%	7.7%
KDH8011	15.8%	97.1%	13.0Mb	0.2M	50.2%	88.6%	10.6%
KDH8017	17.3%	98.3%	235.5Mb	4.0M	50.7%	92.8%	6.5%
KDH8061	58.8%	98.2%	1.7Mb	0.0M	56.0%	89.9%	13.1%
KDH8062	3.6%	97.7%	68.4Mb	1.2M	46.7%	92.3%	5.9%
KDH8075	14.9%	97.4%	87.3Mb	1.5M	47.1%	90.9%	11.8%
KDH08075	4.3%	97.2%	92.0Mb	1.6M	55.8%	95.4%	6.9%
KDH8080	4.0%	96.7%	21.7Mb	0.4M	44.4%	90.2%	4.2%
KDH8081	16.6%	97.4%	47.7Mb	0.8M	44.7%	88.8%	10.5%
KDH8082	29.3%	97.5%	85.1Mb	1.4M	44.2%	85.1%	14.4%
KDH8083	4.1%	96.9%	37.2Mb	0.6M	43.8%	86.8%	12.6%
KDH8090	28.3%	98.0%	33.4Mb	0.6M	49.4%	93.2%	9.8%
KDH8091	0.0%	98.3%	0.0Mb	0.0M	44.4%	95.2%	4.8%
KDH8093	4.5%	97.9%	27.6Mb	0.5M	45.9%	89.5%	9.8%
KDH8119	15.7%	97.0%	109.7Mb	1.9M	55.8%	90.9%	7.6%
KDH8127	7.5%	97.4%	47.4Mb	0.8M	46.4%	93.6%	6.4%
KDH8133	13.1%	96.9%	13.1Mb	0.2M	44.9%	70.6%	23.3%
KDH8135	31.4%	97.7%	92.3Mb	1.6M	51.3%	88.3%	10.4%
KDH8136	30.1%	97.6%	155.9Mb	2.6M	45.1%	91.2%	10.6%
KDH8142	10.6%	98.0%	73.8Mb	1.2M	46.7%	94.5%	6.0%
KDH8172	30.5%	98.0%	241.7Mb	4.1M	45.2%	96.8%	3.5%
KDH8191	3.0%	97.4%	49.8Mb	0.8M	48.9%	92.6%	4.4%
KDH8197	13.0%	98.0%	61.8Mb	1.0M	51.2%	95.9%	5.0%
KDH8199	6.3%	98.2%	67.0Mb	1.1M	48.2%	96.3%	3.5%
KLC0698	17.7%	96.7%	64.5Mb	0.6M	51.8%	89.9%	61.5%
KLC0732	7.1%	97.1%	97.6Mb	0.8M	46.2%	94.4%	35.4%
KLC0834	6.3%	96.2%	110.1Mb	0.9M	44.6%	91.7%	31.2%
KLC834	3.5%	88.5%	24.0Mb	0.3M	56.7%	56.4%	69.5%
KLC849	6.5%	97.9%	5.8Mb	0.1M	45.8%	87.6%	12.2%
KLC854	4.4%	97.8%	57.7Mb	1.0M	47.4%	92.1%	4.9%
KLC869	8.1%	97.3%	44.9Mb	0.8M	47.2%	90.8%	9.7%
KLC870	32.7%	97.5%	261.0Mb	4.4M	45.8%	91.9%	3.5%
KLC871	32.6%	97.3%	278.1Mb	4.7M	56.0%	94.4%	5.0%
KLC885	23.0%	97.9%	191.8Mb	3.2M	48.8%	92.9%	7.7%
KLC898	10.0%	97.5%	101.2Mb	1.7M	52.2%	94.7%	4.3%
KPT001	6.6%	94.4%	105.3Mb	0.9M	61.5%	85.9%	46.3%
KRH0567	1.7%	98.2%	26.6Mb	0.4M	43.8%	86.7%	10.9%
KRH0883	15.4%	98.2%	24.6Mb	0.4M	44.8%	92.4%	7.5%
KRH898	28.7%	98.2%	102.2Mb	1.7M	45.7%	93.3%	6.7%
KRH900	35.2%	97.8%	89.6Mb	1.5M	49.3%	95.2%	6.2%
KRH901	15.7%	97.8%	28.8Mb	0.5M	52.6%	95.1%	2.4%
KRH0919	2.1%	97.7%	157.7Mb	2.7M	45.8%	90.0%	7.4%
KRH0920	29.3%	98.3%	207.1Mb	3.5M	46.2%	93.2%	6.9%
KRH0923	11.8%	97.6%	195.2Mb	3.3M	55.3%	95.1%	6.1%
KRH0924	1.6%	97.3%	21.7Mb	0.4M	45.1%	92.1%	6.9%
KRH0926	3.0%	96.3%	90.1Mb	1.5M	45.6%	90.1%	5.5%
KRH0928	4.2%	97.4%	317.2Mb	5.4M	45.1%	90.8%	10.1%
KRH0933	22.0%	97.8%	109.4Mb	1.8M	49.1%	95.4%	2.8%
KRH0934	30.7%	97.8%	320.4Mb	5.4M	56.0%	94.0%	5.3%
KRH939	1.8%	97.3%	25.3Mb	0.4M	46.5%	93.6%	3.2%
KRH940	0.6%	97.7%	33.8Mb	0.6M	47.7%	93.5%	4.3%
KRH946	10.7%	97.8%	111.8Mb	1.9M	54.6%	96.8%	3.5%
MBL0696	17.8%	98.5%	47.5Mb	0.8M	44.0%	95.5%	6.9%
MBR578	25.4%	97.8%	32.3Mb	0.5M	44.2%	93.3%	8.5%
MBR0584	12.8%	97.9%	73.2Mb	0.6M	40.2%	96.3%	30.7%
MBR0592	15.2%	98.3%	105.0Mb	1.8M	44.1%	93.8%	6.0%
MBR0600	41.3%	98.4%	183.1Mb	3.1M	46.4%	92.2%	9.1%
MBR0605	14.5%	98.2%	41.3Mb	0.7M	43.7%	82.3%	15.5%
MBR634	6.8%	97.7%	83.6Mb	1.4M	47.7%	93.2%	9.6%
MBR0637	16.9%	98.4%	102.5Mb	1.7M	43.1%	95.6%	4.2%
MBR747	36.0%	97.8%	131.2Mb	2.2M	43.4%	94.8%	8.1%
MBR778	9.5%	97.0%	200.9Mb	3.4M	44.7%	84.4%	19.1%
MBR780	28.0%	97.3%	86.3Mb	1.5M	43.1%	95.7%	3.3%
MBR782	4.8%	97.3%	104.5Mb	1.8M	42.4%	91.1%	8.4%
MBR799	1.5%	97.3%	93.7Mb	1.6M	44.7%	91.1%	5.5%
MDH1913	39.6%	97.6%	29.5Mb	0.5M	45.1%	83.9%	17.9%
MDH1967	1.4%	98.2%	0.1Mb	0.0M	45.6%	90.2%	11.1%
MDH2009	3.8%	97.9%	49.4Mb	0.8M	45.3%	95.0%	8.0%
MDH2012	1.0%	97.4%	77.9Mb	1.3M	52.7%	95.7%	6.5%
MDH2023	6.1%	98.1%	20.2Mb	0.3M	49.1%	92.9%	5.6%
MDH2026	27.2%	97.2%	168.6Mb	2.9M	59.4%	90.7%	8.1%
MDH2027	5.2%	97.8%	95.0Mb	1.6M	43.2%	94.2%	6.3%
MDH2028	15.6%	97.0%	134.2Mb	2.3M	61.3%	91.9%	3.8%
MDH2030	13.8%	97.8%	156.7Mb	2.7M	46.8%	92.2%	8.2%
MDH2035	9.2%	97.5%	13.0Mb	0.2M	45.2%	88.9%	13.1%
MDH2059	32.6%	97.7%	35.0Mb	0.6M	44.7%	91.5%	7.2%
MGH521	7.5%	97.6%	20.6Mb	0.3M	53.5%	94.6%	5.4%
MGH0531	0.8%	97.2%	11.6Mb	0.1M	46.8%	91.3%	29.5%
MGH0532	2.0%	97.6%	23.2Mb	0.2M	44.1%	91.8%	36.3%
MGH539	1.3%	97.6%	15.3Mb	0.3M	45.5%	88.2%	11.9%
MGH581	0.7%	95.9%	107.8Mb	1.9M	44.8%	84.4%	5.3%
MGH683	8.1%	96.0%	104.4Mb	1.8M	44.4%	88.3%	8.1%
MGH695	2.1%	96.8%	42.8Mb	0.7M	46.5%	86.1%	21.6%
MGH697	18.7%	97.5%	273.9Mb	4.7M	51.9%	86.6%	13.2%
MGH698	3.5%	96.5%	17.4Mb	0.3M	46.8%	88.9%	4.9%
MGH699	23.1%	97.3%	200.1Mb	3.4M	57.7%	93.2%	4.6%
MGH700	14.0%	96.9%	78.4Mb	1.3M	50.1%	93.7%	3.7%
MGH703	14.9%	96.7%	64.4Mb	1.1M	57.8%	94.6%	7.1%
MGH0704	12.3%	97.4%	36.3Mb	0.6M	56.7%	95.8%	8.0%
MGH0706	25.4%	97.9%	142.6Mb	2.4M	46.4%	94.0%	10.0%
MGH0709	39.0%	98.4%	105.3Mb	1.8M	48.5%	91.5%	13.4%
MGH737	4.1%	97.4%	57.9Mb	1.0M	43.8%	92.3%	5.2%
MGH047623	11.6%	98.3%	9.5Mb	0.2M	37.4%	93.6%	5.5%
MGM0570	3.5%	98.0%	116.3Mb	2.0M	42.1%	91.9%	9.5%
MIK001	13.1%	94.7%	181.4Mb	1.6M	57.8%	84.9%	44.9%
MJC738	1.2%	97.4%	12.0Mb	0.2M	44.0%	90.0%	10.2%
MJC779	12.5%	98.0%	58.3Mb	1.0M	47.3%	89.4%	10.3%
MJC0787	10.4%	97.4%	86.1Mb	1.5M	56.8%	95.0%	6.0%
MJC0791	9.8%	97.4%	26.9Mb	0.5M	44.6%	92.4%	5.4%
MJC791	7.3%	97.5%	40.1Mb	0.7M	43.7%	89.2%	9.1%
MJC0793	5.2%	96.9%	25.9Mb	0.4M	56.6%	96.1%	3.9%
MJC813	2.8%	98.1%	60.1Mb	1.0M	48.1%	94.5%	5.7%
MJC821	5.7%	98.1%	164.4Mb	2.8M	48.5%	94.5%	5.2%
MJC824	3.9%	97.3%	17.5Mb	0.3M	49.8%	97.0%	3.9%
MJC831	4.3%	95.8%	81.2Mb	1.4M	47.2%	91.4%	4.5%
MLG0130	2.6%	97.6%	139.1Mb	1.2M	46.0%	92.5%	36.1%
MMH9865	31.1%	98.1%	44.2Mb	0.7M	47.7%	91.8%	9.5%
MMH9883	16.3%	98.5%	2.8Mb	0.0M	53.2%	90.7%	7.9%
MMH9899	11.1%	98.7%	136.3Mb	2.3M	44.5%	88.1%	10.0%
MMH9908	0.6%	97.7%	32.1Mb	0.5M	44.9%	91.0%	5.3%
MMH9941	8.6%	98.3%	43.2Mb	0.7M	46.0%	93.9%	6.0%
MMH9942	11.4%	97.6%	39.3Mb	0.7M	49.9%	82.0%	18.3%
MNH0937	19.9%	97.0%	234.5Mb	2.0M	48.4%	92.3%	41.4%
MNH1007	37.1%	95.5%	3.0Mb	0.0M	55.7%	91.1%	25.5%
MNH1045	9.1%	97.5%	152.9Mb	1.2M	50.0%	93.7%	28.5%
MNH1058	5.0%	98.3%	65.8Mb	0.5M	40.1%	97.0%	28.0%
MNH1085	11.7%	97.9%	40.2Mb	0.7M	43.2%	89.3%	13.7%
MNH1086	39.9%	97.4%	31.7Mb	0.3M	45.4%	94.4%	38.5%
MNH1119	3.5%	97.2%	173.8Mb	1.5M	48.2%	90.7%	37.6%
MNH1124	20.9%	97.9%	1308.5Mb	10.4M	47.0%	94.7%	24.8%
MNH1139	8.7%	97.5%	22.1Mb	0.2M	47.8%	94.4%	37.9%
MNH1187	16.9%	98.3%	149.4Mb	2.5M	42.8%	87.0%	13.3%
MNH1261	24.5%	98.6%	252.7Mb	4.2M	46.1%	93.9%	6.4%
MNH1426	13.2%	98.3%	195.2Mb	3.3M	41.3%	94.2%	5.3%
MNH1433	9.2%	98.6%	98.0Mb	1.6M	42.5%	95.0%	8.2%
MNH1438	3.9%	98.3%	19.9Mb	0.3M	46.3%	93.1%	8.5%
MNH1468	7.9%	98.0%	89.3Mb	1.5M	46.5%	95.2%	5.8%
MNH1475	16.7%	98.2%	168.0Mb	2.8M	46.4%	94.7%	6.6%
MNH1488	23.6%	98.4%	178.5Mb	3.0M	49.2%	91.6%	9.5%
MNH1520	0.4%	97.6%	2.1Mb	0.0M	42.7%	93.0%	26.2%
MNH1542	1.0%	97.0%	0.9Mb	0.0M	46.1%	87.4%	46.4%
MNH1546	0.8%	97.5%	17.2Mb	0.3M	46.6%	93.9%	5.3%
MNH1560	57.5%	98.5%	166.8Mb	2.8M	35.4%	95.4%	5.9%
MNH1608	28.0%	94.8%	74.0Mb	0.7M	54.0%	83.5%	57.3%
MNH1635	37.6%	99.2%	69.7Mb	1.2M	43.2%	96.2%	7.4%
MNH1636	17.6%	99.2%	18.0Mb	0.3M	49.4%	95.0%	5.9%
MNH1643	44.5%	99.2%	216.4Mb	3.6M	43.2%	97.1%	3.8%
MNH1672	0.9%	98.6%	119.2Mb	2.0M	43.7%	93.8%	7.4%
MNH1679	16.2%	99.1%	234.8Mb	3.9M	47.0%	92.5%	7.2%
MNH1707	6.6%	97.9%	40.1Mb	0.7M	48.6%	90.9%	8.3%
MNH1716	6.9%	97.5%	29.1Mb	0.5M	55.4%	97.3%	3.0%
MNH1724	5.8%	97.8%	9.4Mb	0.2M	47.1%	90.8%	11.2%
MNH1731	54.3%	98.6%	250.4Mb	4.2M	42.5%	94.9%	6.4%
MNH1741	14.7%	98.1%	7.4Mb	0.1M	46.2%	92.7%	4.9%
MNH1743	8.2%	97.5%	63.4Mb	1.1M	51.4%	91.8%	5.0%
MNH1754	44.4%	97.1%	338.8Mb	2.9M	38.3%	96.2%	50.6%
MNH1766	25.6%	97.7%	152.6Mb	2.6M	60.2%	91.1%	10.0%
MNH1782	25.4%	97.9%	237.3Mb	4.0M	60.3%	91.7%	13.4%
MNH1783	40.3%	97.4%	155.2Mb	2.6M	44.1%	92.9%	7.3%
MNH1785	24.4%	97.3%	38.1Mb	0.7M	46.2%	86.5%	12.9%
MNH1789	16.3%	97.3%	52.9Mb	0.9M	45.5%	88.3%	11.1%
MNH1792	6.6%	97.2%	46.4Mb	0.8M	47.0%	89.4%	12.5%
MNH1793	10.4%	97.0%	69.3Mb	1.2M	47.7%	94.1%	5.1%
MNH1794	13.3%	97.0%	64.1Mb	1.1M	52.8%	94.8%	4.5%
MNH1795	41.7%	97.7%	291.3Mb	4.9M	42.3%	93.3%	8.5%
MNH1796	10.8%	97.0%	83.9Mb	1.4M	44.6%	85.1%	17.0%
MNH1801	37.0%	97.2%	504.0Mb	8.6M	51.8%	92.4%	6.3%
MNH1802	29.0%	97.9%	95.9Mb	1.6M	42.9%	91.4%	11.0%
MNH1822	26.5%	98.1%	248.8Mb	4.2M	54.0%	92.7%	9.4%
MNH1827	0.0%	88.2%	0.0Mb	0.0M	50.0%	83.3%	16.7%
MNH1829	9.7%	97.6%	50.7Mb	0.9M	46.3%	93.8%	5.7%
MNH1830	15.5%	98.0%	96.9Mb	1.6M	48.4%	95.5%	4.1%
MNH1833	22.9%	98.4%	192.3Mb	3.2M	48.9%	93.9%	5.5%
MNH1834	2.0%	97.9%	208.1Mb	3.5M	44.4%	92.0%	6.0%
MNH1835	27.9%	97.8%	51.7Mb	0.9M	46.0%	95.8%	6.3%
MNH1837	23.7%	97.8%	108.3Mb	1.8M	48.2%	94.4%	5.0%
MNH1838	9.1%	98.0%	59.0Mb	1.0M	51.3%	92.9%	5.6%
MNH1841	18.3%	98.3%	83.3Mb	1.4M	47.2%	94.4%	3.5%
MNH1842	6.6%	97.8%	85.6Mb	1.4M	47.6%	93.5%	5.2%
MNH1844	1.0%	97.9%	69.2Mb	1.2M	43.9%	90.1%	6.2%
MNH1847	1.0%	97.8%	53.2Mb	0.9M	47.5%	92.3%	3.2%
MNH1851	5.6%	97.3%	23.8Mb	0.4M	44.8%	92.3%	8.3%
MNH1854	24.3%	95.0%	119.9Mb	1.1M	54.3%	79.2%	57.4%
MNH1857	7.9%	97.5%	49.9Mb	0.8M	50.7%	87.9%	10.1%
MNH1858	4.2%	98.0%	58.1Mb	1.0M	44.5%	89.0%	9.4%
MNH1859	6.7%	97.9%	18.4Mb	0.3M	44.7%	92.0%	10.3%
MNH1860	8.3%	97.2%	101.9Mb	1.7M	42.3%	90.0%	12.0%
MNH1861	3.1%	97.7%	27.3Mb	0.5M	42.1%	90.1%	10.9%
MNH1863	2.6%	98.0%	24.8Mb	0.4M	45.1%	91.2%	6.7%
MNH1864	20.7%	98.2%	183.4Mb	3.1M	44.2%	92.9%	7.6%
MNH1889	12.5%	97.1%	205.6Mb	3.5M	49.6%	93.4%	4.3%
MNH1891	2.6%	97.4%	47.1Mb	0.8M	41.6%	91.5%	6.5%
MNH1915	7.0%	97.1%	78.4Mb	1.3M	45.9%	94.0%	5.6%
MNH1920	1.0%	97.8%	49.6Mb	0.8M	46.5%	91.8%	5.3%
MNH1935	25.6%	97.8%	299.9Mb	5.1M	54.6%	93.0%	8.9%
MNH1943	3.6%	97.0%	45.9Mb	0.8M	49.9%	92.8%	5.3%
MNH1964	4.8%	97.6%	120.9Mb	2.1M	44.5%	91.9%	6.6%
MNH1977	5.1%	97.7%	17.8Mb	0.3M	48.2%	93.4%	5.3%
MNH2020	9.1%	97.7%	26.8Mb	0.5M	53.2%	95.1%	5.2%
MNH2021	1.4%	97.3%	17.8Mb	0.3M	47.0%	94.4%	6.1%
MNH2028	1.6%	97.3%	3.0Mb	0.1M	52.7%	91.9%	4.2%
MNH2064	8.1%	98.4%	0.2Mb	0.0M	56.6%	90.1%	12.9%
MNH2068	2.1%	97.6%	36.6Mb	0.6M	45.4%	96.0%	4.1%
MNH2071	2.4%	97.8%	20.0Mb	0.3M	45.3%	97.2%	4.0%
MNH2075	6.6%	97.9%	17.7Mb	0.3M	54.1%	94.1%	3.8%
MNH2083	8.2%	97.9%	55.1Mb	0.9M	53.3%	93.4%	4.8%
MNH9848	2.8%	97.0%	74.9Mb	0.6M	44.8%	91.3%	32.1%
MNH9851	13.4%	98.1%	232.5Mb	1.9M	45.7%	92.8%	33.8%
MNH9875	0.0%	0.0%	0.0Mb	0.0M	0.0%
MRH5138	44.2%	98.1%	220.7Mb	3.7M	37.6%	95.7%	6.8%
MRH5156	0.3%	95.5%	0.0Mb	0.0M	46.6%	92.0%	5.8%
MRH5162	17.5%	98.1%	97.5Mb	1.6M	44.5%	92.3%	7.5%
MRH5191	0.0%	0.0%	0.0Mb	0.0M	0.0%
MRH5197	39.3%	97.4%	39.9Mb	0.4M	47.5%	88.4%	46.9%
MRH5211	30.1%	99.0%	79.1Mb	1.3M	48.3%	96.1%	5.4%
MRH5236	16.5%	98.2%	208.2Mb	3.5M	45.0%	86.9%	14.5%
MRH5255	12.3%	96.5%	208.1Mb	3.6M	60.5%	91.5%	4.5%
MRH5307	2.8%	97.5%	44.3Mb	0.8M	49.9%	93.5%	4.6%
MSC811	3.6%	98.0%	68.4Mb	1.2M	45.8%	91.1%	8.8%
MSH0308	0.7%	98.0%	41.8Mb	0.7M	46.6%	92.4%	6.9%
MSH312	4.1%	97.9%	50.3Mb	0.9M	45.8%	91.9%	7.6%
MSH319	17.7%	98.5%	188.5Mb	3.2M	44.8%	93.2%	7.9%
MSH362	7.3%	93.5%	15.0Mb	0.1M	50.9%	66.9%	61.2%
MSH364	43.4%	97.8%	250.9Mb	2.1M	39.1%	97.7%	50.5%
MSH0379	52.5%	98.9%	0.5Mb	0.0M	55.7%	92.7%	9.7%
MSH416	0.0%	98.0%	0.0Mb	0.0M	43.0%	95.5%	3.1%
MSH0421	7.5%	98.3%	118.6Mb	2.0M	44.6%	95.5%	3.7%
MSH421	5.4%	97.6%	143.1Mb	2.4M	43.2%	93.6%	6.2%
MSH0423	22.6%	96.2%	215.9Mb	3.7M	61.2%	87.1%	7.2%
MSH424	8.9%	98.0%	61.0Mb	1.0M	45.6%	93.6%	7.1%
MSH425	18.1%	98.2%	131.6Mb	2.2M	45.8%	92.9%	8.8%
MSH426	9.6%	98.1%	49.2Mb	0.8M	44.0%	93.0%	8.2%
MSH427	12.2%	98.0%	72.5Mb	1.2M	50.4%	92.9%	5.9%
MSH428	10.1%	98.0%	38.4Mb	0.6M	45.7%	94.5%	6.0%
MSH0431	18.2%	97.7%	215.4Mb	3.7M	55.4%	91.3%	8.5%
MSH0432	19.6%	97.2%	265.3Mb	4.5M	51.7%	90.5%	8.6%
MSH0438	11.9%	97.8%	133.5Mb	2.3M	52.4%	94.9%	4.3%
MSH444	30.2%	97.9%	402.2Mb	6.8M	49.2%	94.6%	5.8%
MSH1741	31.0%	96.8%	184.6Mb	1.6M	49.9%	93.6%	55.1%
MTH0657	14.2%	97.9%	51.5Mb	0.4M	43.1%	93.7%	30.4%
MTH666	1.7%	97.5%	12.5Mb	0.2M	47.1%	92.0%	8.5%
MTH0667	22.0%	97.9%	191.9Mb	1.6M	41.3%	92.6%	38.7%
MTH705	31.0%	93.8%	39.0Mb	0.4M	58.1%	73.0%	61.3%
MTH0713	21.1%	96.0%	149.5Mb	1.3M	56.5%	92.2%	48.5%
MTH748	3.1%	97.0%	46.1Mb	0.8M	47.4%	91.8%	9.9%
MTH757	33.8%	97.4%	242.3Mb	4.1M	51.2%	94.4%	3.4%
MTH760	1.1%	97.4%	20.1Mb	0.3M	49.0%	91.5%	7.2%
MTH764	14.4%	97.7%	104.9Mb	1.8M	50.8%	93.1%	7.2%
MTH765	15.1%	97.6%	105.3Mb	1.8M	46.8%	91.8%	5.9%
NDH1141	0.5%	96.8%	71.1Mb	0.6M	47.8%	90.0%	15.4%
NDH1149	4.5%	97.2%	43.7Mb	0.4M	43.5%	91.7%	39.7%
NHC0128	32.0%	97.9%	564.0Mb	5.0M	42.6%	88.5%	51.2%
NHC0244	24.9%	98.1%	78.2Mb	1.3M	44.6%	96.4%	4.5%
NHC0256	21.4%	98.6%	75.7Mb	1.3M	46.8%	89.2%	13.0%
NHC258	6.5%	98.1%	121.7Mb	2.1M	43.7%	83.5%	14.8%
NHC0273	23.3%	98.0%	109.5Mb	1.8M	44.5%	96.4%	4.4%
NHC274	15.6%	98.1%	56.3Mb	1.0M	46.8%	89.7%	11.3%
NHC0302	23.3%	98.4%	148.7Mb	2.5M	46.0%	90.0%	9.8%
NHC0328	18.6%	98.4%	102.9Mb	1.7M	46.2%	85.9%	14.6%
NHC329	17.3%	98.3%	95.6Mb	1.6M	45.9%	84.5%	15.3%
NHC0336	37.4%	99.1%	4.7Mb	0.1M	46.0%	94.9%	7.9%
NHC555	1.5%	97.1%	83.4Mb	1.4M	45.6%	92.9%	6.0%
NHC571	6.3%	97.7%	71.0Mb	1.2M	47.2%	92.3%	6.1%
NHC663	4.0%	98.0%	44.4Mb	0.8M	43.5%	91.7%	8.6%
NHC672	7.2%	98.3%	32.2Mb	0.5M	45.4%	92.9%	8.7%
NHC674	6.3%	98.1%	164.3Mb	2.8M	44.3%	86.8%	13.5%
RHC716	6.1%	95.5%	185.6Mb	1.6M	44.6%	91.9%	38.6%
RHC0716	41.8%	97.7%	310.1Mb	2.6M	38.0%	96.8%	46.1%
RHC0753	2.4%	99.2%	0.2Mb	0.0M	45.9%	93.4%	6.1%
RHC850	2.3%	96.3%	70.7Mb	1.2M	48.0%	87.5%	7.1%
RHC851	12.2%	98.3%	82.5Mb	1.4M	52.6%	95.6%	4.2%
RHC855	2.7%	98.0%	55.0Mb	0.9M	46.3%	94.0%	4.1%
SBH1447	17.4%	97.4%	59.9Mb	0.5M	46.0%	88.2%	45.9%
SBH1453	28.5%	97.6%	90.8Mb	0.8M	44.6%	89.1%	50.8%
SBH1530	6.4%	97.8%	32.9Mb	0.6M	42.6%	90.6%	11.6%
SBH1532	0.9%	97.9%	10.0Mb	0.2M	45.9%	90.1%	10.1%
SBH1537	12.4%	98.5%	78.6Mb	1.3M	44.5%	93.8%	8.8%
SRH935	1.2%	96.3%	23.2Mb	0.2M	47.6%	89.4%	32.5%
SRH1005	0.4%	95.1%	2.0Mb	0.0M	44.8%	81.5%	53.0%
SRH1055	1.1%	96.8%	29.5Mb	0.2M	47.2%	90.9%	29.8%
SRH1067	0.2%	95.9%	13.4Mb	0.1M	47.3%	88.4%	21.5%
SRH1236	7.2%	96.8%	332.5Mb	2.8M	53.9%	91.1%	35.5%
SRH1243	3.3%	96.5%	23.1Mb	0.2M	47.8%	95.0%	26.3%
SRH1250	5.1%	98.3%	40.4Mb	0.7M	45.4%	81.5%	19.7%
SRH1268	0.8%	98.0%	31.1Mb	0.5M	46.8%	91.7%	7.3%
SRH1293	11.1%	98.2%	33.4Mb	0.6M	45.4%	88.1%	14.2%
SRH1332	2.9%	97.6%	57.3Mb	1.0M	42.0%	90.7%	7.9%
SRH1408	21.4%	97.5%	180.8Mb	1.6M	47.4%	86.3%	47.2%
SRH1448	2.3%	98.4%	2.1Mb	0.0M	46.7%	89.5%	12.9%
SRH1452	2.2%	98.9%	0.0Mb	0.0M	48.7%	95.6%	4.9%
SRH1528	9.0%	96.5%	140.0Mb	1.3M	43.6%	82.0%	48.6%
SRH1536	8.1%	97.1%	137.7Mb	2.3M	51.7%	93.3%	4.1%
SRH1545	1.2%	97.9%	29.7Mb	0.5M	46.2%	93.2%	6.1%
SRH1546	1.3%	97.5%	71.0Mb	1.2M	46.0%	89.2%	8.9%
SRH1583	13.1%	97.4%	93.5Mb	1.6M	54.9%	92.8%	4.2%
SRH1588	0.3%	96.7%	8.2Mb	0.1M	46.5%	87.5%	5.0%
SRH1606	4.4%	97.7%	188.1Mb	3.2M	42.7%	88.0%	13.0%
STG0364	27.9%	98.7%	319.9Mb	5.4M	45.4%	94.2%	6.7%
STG0370	46.9%	98.1%	11.3Mb	0.2M	54.7%	89.0%	12.5%
TRH416	30.0%	98.2%	367.5Mb	3.2M	36.0%	89.7%	42.5%
TRH0742	1.7%	95.6%	216.6Mb	1.9M	41.5%	89.8%	42.0%
TRH0757	8.3%	98.0%	85.3Mb	0.7M	44.9%	95.6%	36.8%
TRH0767	1.9%	98.1%	27.0Mb	0.5M	46.8%	85.5%	15.7%
TRH0771	12.0%	98.0%	118.9Mb	2.0M	56.7%	87.5%	14.7%
TRH0824	1.9%	98.8%	53.8Mb	0.9M	43.4%	90.0%	10.6%
TRH0831	1.5%	98.9%	23.9Mb	0.4M	44.2%	92.2%	7.0%
TRH0832	1.4%	98.8%	15.6Mb	0.3M	43.7%	92.6%	7.3%
ZHC0058	36.9%	98.3%	480.0Mb	3.8M	39.9%	95.9%	25.7%
ZHC0084	13.1%	97.2%	181.9Mb	3.1M	63.9%	84.8%	12.0%
ZHC0088	27.9%	98.1%	61.0Mb	1.0M	50.2%	85.0%	15.5%
ZHC0091	13.8%	97.9%	5.3Mb	0.1M	49.3%	93.0%	9.0%
ZHC0094	23.4%	97.9%	183.8Mb	3.1M	57.5%	90.8%	10.3%
ZHC0095	35.1%	98.1%	142.7Mb	2.4M	54.8%	86.3%	14.0%
ZHC0096	29.7%	98.0%	239.8Mb	4.1M	56.6%	85.5%	17.3%
ZHC0098	17.7%	95.5%	65.0Mb	0.6M	48.5%	80.7%	59.5%

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: general_stats_table_table

Sort	Group	Column	Description	ID	Scale
\|\|	fastp	% Duplication	Duplication rate before filtering	`fastp-pct_duplication`
\|\|	fastp	% > Q30	Percentage of reads > Q30 after filtering	`fastp-after_filtering_q30_rate`
\|\|	fastp	Mb Q30 bases	Bases > Q30 after filtering (millions)	`fastp-after_filtering_q30_bases`	base_count
\|\|	fastp	Reads After Filtering	Total reads after filtering (millions)	`fastp-filtering_result_passed_filter_reads`	read_count
\|\|	fastp	GC content	GC content after filtering	`fastp-after_filtering_gc_content`
\|\|	fastp	% PF	Percent reads passing filter	`fastp-pct_surviving`
\|\|	fastp	% Adapter	Percentage adapter-trimmed reads	`fastp-pct_adapter`

fastp

Version:


                      
                        0.24.0

All-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...).URL: https://github.com/OpenGene/fastpDOI: 10.1093/bioinformatics/bty560

Fastp goes through fastq files in a folder and perform a series of quality control and filtering. Quality control and reporting are displayed both before and after filtering, allowing for a clear depiction of the consequences of the filtering process. Notably, the latter can be conducted on a variety of parameters including quality scores, length, as well as the presence of adapters, polyG, or polyX tailing.

Filtered Reads

Filtering statistics of sampled reads.

Created with MultiQC

Insert Sizes

Insert size estimation of sampled reads.

Created with MultiQC

Sequence Quality

Average sequencing quality over each base of all reads.

Created with MultiQC

GC Content

Average GC content over each base of all reads.

Created with MultiQC

N content

Average N content over each base of all reads.

Created with MultiQC

Software Versions

Software Versions lists versions of software tools extracted from file contents.

Software	Version
fastp	`0.24.0`

v1.28

MultiQC Toolbox

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General Statistics

fastp

Filtered Reads

Insert Sizes

Sequence Quality

GC Content

N content

Software Versions

Toggle navigation v1.28

MultiQC Toolbox

Apply Highlight Samples

Apply Rename Samples

Apply Show / Hide Samples

Explain with AI

Export Plots

Choose Plots

Save Settings

Load Settings

Tool Citations

About MultiQC

General Statistics

General Statistics: Columns

fastp

Filtered Reads

Insert Sizes

Sequence Quality

GC Content

N content

Software Versions

v1.28

Highlight Samples

Rename Samples

Show / Hide Samples